Precision Medicine Bioinformatics

Introduction to bioinformatics for DNA and RNA sequence analysis

Schedule

PR Informatics, Glasgow, Scotland, 29 Oct - 2 Nov 2018 (course page)

Day Time Duration Module Topic
1 9:00 - 12:00 3:00 1 Setup - Intro to Precision Medicine
  12:00 - 1:00 1:00   LUNCH
  1:00 - 5:00 4:00 2 Inputs - References, Annotations and Raw Data
2 9:00 - 12:00 3:00 3 Align - Alignment Algorithms, Visualization, and QC
  12:00 - 1:00 1:00   LUNCH
  1:00 - 5:00 4:00 4 Germline - Germline WGS and Exome Variant Analysis
3 9:00 - 12:00 3:00 5 Somatic - Somatic WGS and Exome Variant Analysis
  12:00 - 1:00 1:00   LUNCH
  1:00 - 5:00 4:00 6 RNAseq - RNAseq Expression, Differential Expression, and Fusion Analysis
4 9:00 - 12:00 3:00 7 Clinical - Clinical Interpretation of Germline and Somatic Variants
  12:00 - 1:00 1:00   LUNCH
  1:00 - 5:00 4:00 8 Immune - Immunogenomic Analysis and Personalized Vaccines
5 9:00 - 12:00 3:00 9 CWL - Intro to the Common Workflow Language
  12:00 - 1:00 1:00   LUNCH
  1:00 - 5:00 4:00 10 Additional Resources, Open Forum, Work on your own Data